Martin, B.T., T.K. Chafin, M.R. Douglas, M.E. Douglas. 2021.
ClineHelpR: an R package for genomic cline outlier
detection and visualization. BMC Bioinformatics:
22(1), 1-10. DOI: 10.1186/s12859-021-04423-x.
Chafin, T.K., M.R. Douglas, M.R. Bangs, B.T. Martin, S.M.
Mussmann, M.E. Douglas. 2021. Taxonomic Uncertainty and
the Anomaly Zone: Phylogenomics Disentangle a Rapid
Radiation to Resolve Contentious Species (Gila
robusta Complex) in the Colorado River.
Genome Biology and Evolution: 13(9), evab200. DOI: 10.1093/gbe/evab200.
Chafin, T.K., Z.D. Zbinden, M.R. Douglas, B.T. Martin, C.R.
Middaugh, M.C. Gray, J.R. Ballard, M.E. Douglas. 2021.
Spatial Population Genetics in Heavily Managed Species:
Separating Patterns of Historical Translocation from
Contemporary Gene Flow in White-tailed Deer.
Evolutionary Applications: 14(6), 1673-1689. DOI: 10.1111/eva.13233.
Martin, B.T., T.K. Chafin, M.R. Douglas, J.S. Placyk, Jr.,
R.D. Birkhead, C.A. Phillips, M.E. Douglas. 2021. The
Choices We Make and the Impacts They Have: Machine
Learning and Species Delimitation in North American Box
Turtles (Terrapene spp.). Molecular Ecology
Resources: 21(8), 2801-2817. DOI: 10.1111/1755-0998.13350.
Martin, B.T., M.R. Douglas, T.K. Chafin, J.S. Placyk, Jr.,
R.D. Birkhead, M.E. Douglas. 2020. Contrasting
Signatures of Introgression in North American Box Turtle
(Terrapene spp.) Contact Zones. Molecular
Ecology: 29(21), 4186-4202. DOI: 10.1111/mec.15622.
Chafin, T.K., M.R. Douglas, B.T. Martin, Z.D. Zbinden, C.R.
Middaugh, J.R. Ballard, M.C. Gray, D. White Jr., M.E.
Douglas. 2020. Age Structuring and Spatial Heterogeneity
in Prion Protein Gene (PRNP) Polymorphism in
White-tailed Deer. Prion: 14(1), 238-248. DOI: 10.1080/19336896.2020.1832947.
Chafin, T.K., M.R. Douglas, B.T. Martin, M.E. Douglas. 2019.
Hybridization Drives Genetic Erosion in Sympatric Desert
Fishes of Western North America. Heredity: 123,
759-773. DOI: 10.1038/s41437-019-0259-2.
Chafin, T.K., B.T. Martin, S.M. Mussmann, M.R. Douglas, M.E.
Douglas. 2018. FRAGMATIC: In Silico Locus Prediction and
Its Utility in Optimizing ddRADseq Projects.
Conservation Genetics Resources: 2017, 1-4. DOI: 10.1007/s12686-017-0814-1.
Martin, B.T., N.P. Bernstein, R.D. Birkhead, J.F. Koukl,
S.M. Mussmann, J.S. Placyk, Jr. 2013. Sequence-based
Molecular Phylogenetics and Phylogeography of the
American Box Turtles (Terrapene spp.) with
Support from DNA Barcoding. Molecular Phylogenetics
and Evolution: 68, 119-134. DOI: 10.1016/j.ympev.2013.03.006.
Martin, B.T., D.D. Goodding, N.B. Ford, J.S. Placyk, Jr.
2013. Sensory Mediation of Foraging Strategies in the
Western Lesser Siren (Siren intermedia
nettingi). Journal of Herpetology: 47(1),
75-77. DOI: 10.1670/11-209.
Non-Refereed Publications
Martin, B.T., N.P. Bernstein, R.D. Birkhead, J.F. Koukl,
S.M. Mussmann, J.S. Placyk Jr. 2014. On the
Reclassification of the Terrapene (Testudines:
Emydidae): A Response to Fritz and Havaš. Zootaxa:
3835(2): 292–294.